miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|186761795|gb|EX245682.1|EX245682 CACGAGGTTTTCTTGTAATGATTTTGGGACTATGCACAGAGAGGATATCGTCAGCTGAGGTGGAGACAATGATTCTGACA
AAGCAGTACCGCTGCATACATTCAGCAAACTGTCAATGCACGAAAGGACATCTGAGTGAAGAACTGATATTCCTAGTATT
CCAGCAATTGAACTGGAACCCTAAATTGATTGCTGCTCTGTCCTGTGTATGCAAATGGTTTGATGATCTTGCTAAGCGGA
TACTATGGAAGGAATTTTGCCGAACTAGAGCACCAAAGATGATGATTGATCTGCAATCTAGTGGAAGTCACAGTGTTGAT
GGGAACTGGAGGGCACTTGGAAAGCTGCTTATATATTGTTCAGGATGTACCAAGGGTGGTCTTTTCAACAGCATTCAAAT
CCCCGGTCATTTTGTTTATAGAACGCGGTTCTCTAGGACATCNNNAAAAAGCTTTCTTCTGCCTCAATGCAGAACAGATG
TTTTATATGTTTCTGACCCTTGTGAACATCTTGACCAAGGGGAAGAAGGTGATGTGGGATTTTTCCGCGGGGTCTTCAAA
TCATTCTCAATGT




Most similar to sp|Q9FLZ8|EDL2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FLZ8|EDL2_ARATH EID1-like F-box protein 2 OS=Arabidopsis
           thaliana GN=EDL2 PE=2 SV=1
          Length = 249

 Score =  305 bits (782), Expect = 1e-82
 Identities = 139/169 (82%), Positives = 154/169 (91%), Gaps = 1/169 (0%)
 Frame = +3

Query: 69  MILTKQYRCIHSANCQCTKGHLSEELIFLVFQQLNWNPKLIAALSCVCKWFDDLAKRILW 248
           MI+ KQYRCIHSA C CTKGHLSEE++FL+ Q LNWNP +IA LSCVCKWFDDLAKR+LW
Sbjct: 1   MIIAKQYRCIHSATCHCTKGHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLW 60

Query: 249 KEFCRTRAPKMMIDLQSSGSHSVDGNWRALGKLLIYCSGCTKGGLFNSIQIPGHFVYRTR 428
           KEFCR RAPKMM DLQSSGSHSVDG+WRALGKLLIYCSG +KGGLFN +QI GHFV+RTR
Sbjct: 61  KEFCRARAPKMMSDLQSSGSHSVDGSWRALGKLLIYCSGSSKGGLFNDVQISGHFVHRTR 120

Query: 429 FSRTSXKSFLLPQCRT-DVLYVSDPCEHLDQGEEGDVGFFRGVFKSFSM 572
           FSRTS +SFL PQCRT D+LYVSDPCEHLDQGE+GD+GFFRG+FKSFSM
Sbjct: 121 FSRTSGRSFLPPQCRTDDILYVSDPCEHLDQGEDGDLGFFRGIFKSFSM 169